This course examines a species population and its interactions within their ecosystem. Topics covered include demography and dynamics of structured populations, population regulation, population dynamics, metapopulations, and life history strategies. Functional genomics aims to identify a function for every gene in a genome. Using model systems like yeast, fruit flies and human cell lines, scientists can work toward this goal using a variety of methods.
Approaches discussed will include a genetic approach by systematically reducing gene function by mutation or RNAi and examining a phenotype. Cellular location approaches using GFP fusions, yeast two-hybrid, and proteomics approaches will also be reviewed. This course examines the genetic mechanisms of evolutionary change at the DNA sequence level in populations.
Topics covered will include models of nucleotide and amino acid substitution, linkage disequilibrium and joint evolution of multiple loci. Evolutionary topics include neutrality, adaptive selection and hitchhiking. Case histories of molecular evolution as well as hypothesis testing and estimation of evolutionary parameters will be discussed. Introduction to concepts and applications of Systems Biology.
Identification of molecular interactions that underlie cellular function using data acquired through high-throughput approaches. A focus on transcription networks, and the types of network motifs they contain, including feed-forward loops, autoregulation, and the single-input module will be discussed. Examples of networks in development will be covered.
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- Introduction to Experimental Biophysics - A Laboratory Guide!
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Contemporary studies of how populations and species evolved adaptations to their ecological habitats. Focus on modern methods of genome mapping and sequence data and analysis in wild populations that can identify genetic changes that contributed to ecological adaptations. Emphasis on case studies of genomics of adaptation in plant and animal systems, including humans and our adaptations to environments that our ancestors encountered as they colonized diverse habitats throughout the world.
Examples will also illustrate how speciation and hybridization can contribute to adaptive biodiversity. The structures and reactions of the compounds of carbon and the impact of selected organic compounds on society. Laboratory: techniques of separation, organic reactions and preparations, and systematic identification of compounds by their spectral and chemical properties. Introduction to the study of temporal patterns in nonequilibrium systems. Theoretical, computational, and experimental insights used to explain phase space, bifurcations, stability theory, universality, attractors, fractals, chaos, and time-series analysis.
Each student carries out an individual research project on a topic in nonlinear dynamics and gives a formal presentation of the results. Builds on and extends the core concepts introduced in Introduction to Biophysics. Advanced topics and recent developments in biophysics. This course is a mathematical examination of processes in human physiological systems including pressure and electrical forces, concentration, kinetics and diffusion and mechanical forces. Examples of each will be discussed in the nervous, cardiovascular, renal, gastrointestinal, respiratory, and endocrine systems.
Introduction to Experimental Biophysics - A Laboratory Guide
The laboratory portion will complement the lecture topics and use detailed statistical analysis of data. This course focuses on the basics of equilibrium thermodynamics and introduces the concepts of temperature, internal energy, and entropy using ideal gases and ideal paramagnets as models. The chemical potential is defined and the three thermodynamic potentials are discussed with use of Legendre transforms. It will also cover topics including the power of thermodynamics in gases and condensed matter, phase transitions, probability theory, and quantum statistics.
Introduction to the non-relativistic quantum description of matter. Students will determine the topics covered in this research seminar on mathematical methods for modeling biological systems based on their own research interests. Students will review mathematical methods of differential equations and probability, and discuss how to use mathematical techniques in development of models in biology.
The seminar is highly interactive and students are expected to contribute to presentations and class discussions on individual research projects. In the first weeks of the course each student will work with the instructor to agree upon a substantial final individual student modeling project that the student will develop over the course of the class. Skip to main content. Molecular Bioscience with Tracks in Cell and Molecular Biology, Genetics and Genomics, Biogeochemistry, Biophysics All biological sciences rest on two central principles — all organisms and their characteristics are the product of evolution, and all life processes have a physical and chemical basis.
Major Requirements Not every course listed is offered every semester, and the course list will be updated periodically. Required Courses Divisional Foundation Courses. Mathematical Foundations 1 The fundamental concepts and tools of calculus, probability, and linear algebra are essential to modern sciences, from the theories of physics and chemistry that have long been tightly coupled to mathematical ideas, to the collection and analysis of data on complex biological systems.
Integrated Science 1 This course focuses on the concept of energy and its relevance for explaining the behavior of natural systems. Mathematical Foundations 2 The fundamental concepts and tools of calculus, probability, and linear algebra are essential to modern sciences, from the theories of physics and chemistry that have long been tightly coupled to mathematical ideas, to the collection and analysis of data on complex biological systems.
Integrated Science 2 This course focuses on the collective behavior of systems composed of many interacting components. Integrated Science 3 Integrated Science 3 emphasizes the physics and chemistry concepts of oscillating systems, waves, and fields, and includes applications to human perception. Scientific Writing and Presentations I Scientific Writing and Presentations cover some of the areas of scientific communication that a scientist needs to know and to master in order to successfully promote his or her research and career.
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- Introduction To Experimental Biophysics Biological Methods For Physical Scientists;
- Einsteins theory : a rigorous introduction to general relativity for the mathematically untrained?
- Introduction to Experimental Biophysics - A Laboratory Guide;
- In Praise of Doubt: How to Have Convictions Without Becoming a Fanatic;
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Scientific Writing and Presentations II Scientific Writing and Presentations cover some of the areas of scientific communication that a scientist needs to know and to master in order to successfully promote his or her research and career. Introduction to the Molecular Basis of Life Though there is no exact definition of life, living organisms share some common properties including the ability to keep their interior composition distinct from their external environment and the ability to reproduce.
Introduction to Biochemistry Provides an introduction to the chemistry of biological macromolecules from the single molecule to cellular metabolism to the whole organism level. Introduction to Biophysics The application of physics theory and experimental techniques to biological systems can be used to answer complex questions. Genomics and Evolution Examines the structure and function of genomics and the flow of genomic information from parent to progeny and through populations. Biomedical Ethics This course examines the study of ethical issues emerging from technological advancements in biomedical research using a combination of disciplines including biology, philosophy, and law.
Molecular Genetic Analysis A range of genetic traits can be mapped and investigated using molecular approaches. Cell and Molecular Biology Introduces major concepts in eukaryotic cell biology with a focus on molecular biology. Microbiology This course examines a number of different types of microbes including bacteria, archaea, fungi and viruses. Cell Signaling and Diseases During the past several decades, exploration in basic research has yielded extensive knowledge about the numerous and intricate signaling processes involved in the development and maintenance of a functional organism.
Experimental Molecular Biology Progress in laboratory molecular biology and biotechnology have yielded phenomenal advancements in research, medicine, and diagnostics. Developmental Biology: Development, Stem Cells, and Regeneration Mechanisms of fertilization, control of cell divisions, diversification of cell types, organization and differentiation of cells and tissues of the organism, and patterning necessary to establish the body plan of many organisms including vertebrates, invertebrates and plants.
Computational Biology and Bioinformatics This course focuses on the analysis of genomic and genome-related biological data sets using computational methods. Physical Biochemistry This course examines the theory and methods used to characterize the physical properties of biological macromolecules like DNA, RNA, and protein. Cancer Genetics Overview of the genetic changes associated with cancer and the molecular events that transform normal cellular processes into tumor-promoting conditions.
Dynamic Earth and Oceans: Physical and Biological Sciences for the Environment Introduction to the dynamic processes that shape the Earth, the oceans, and the environment and their impact upon society. Introduction to Biogeochemistry Biogeochemistry is the study of how chemical elements flow through living systems and their physical environments. Ecophysiology This course examines how plants sense and react to environmental change in both an organismal and evolutionary context and how those reactions are scaled to the specific change.
Ecosystem Service Ecosystem services are the benefits that people obtain from ecosystems and utilizes a system level approach to examine the interactions between four services. Biodiversity and Conservation An overview of biological diversity, its patterns, and the current extinction crisis.
Introduction to experimental biophysics : biological methods for physical scientists. Responsibility Jay L. Edition Second edition.
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